Linear mixed-effects models using Eigen and S4


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Documentation for package ‘lme4’ version 0.999902345-0

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anova.merMod Class "merMod" of Fitted Mixed-Effect Models
bootMer Model-based (Semi-)Parametric Bootstrap for Mixed Models
cake Breakage angle of chocolate cakes
cbpp Contagious bovine pleuropneumonia
coef.merMod Class "merMod" of Fitted Mixed-Effect Models
devcomp Extract the deviance component list
deviance.merMod Class "merMod" of Fitted Mixed-Effect Models
Dyestuff Yield of dyestuff by batch
Dyestuff2 Yield of dyestuff by batch
findbars Determine random-effects expressions from a formula
fitted.merMod Class "merMod" of Fitted Mixed-Effect Models
fixed.effects Extract fixed-effects estimates
fixef Extract fixed-effects estimates
fixef.merMod Extract fixed-effects estimates
formula.merMod Class "merMod" of Fitted Mixed-Effect Models
getL Extract or Get Generalize Components from a Fitted Mixed Effects Model
getL-method Extract or Get Generalize Components from a Fitted Mixed Effects Model
getME Extract or Get Generalize Components from a Fitted Mixed Effects Model
GHrule Univariate Gauss-Hermite quadrature rule
glmer Fit Generalized Linear Mixed-Effects Models
glmer.nb glmer() for Negative Binomial
glmerMod-class Class "merMod" of Fitted Mixed-Effect Models
glmFamily Generator object for the 'glmFamily' class
glmFamily-class Class '"glmFamily"' - a reference class for 'family'
glmResp Generator objects for the response classes
glmResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
golden Generator object for the golden search optimizer class.
golden-class Class '"golden"'
GQdk Sparse Gaussian Quadrature grid
GQN Sparse Gauss-Hermite quadrature grids
grouseticks Data on red grouse ticks from Elston et al. 2001
grouseticks_agg Data on red grouse ticks from Elston et al. 2001
InstEval University Lecture/Instructor Evaluations by Students at ETH
isGLMM Check characteristics of models
isLMM Check characteristics of models
isNested Is f1 nested within f2?
isNLMM Check characteristics of models
isREML Check characteristics of models
lmer Fit Linear Mixed-Effects Models
lmerMod-class Class "merMod" of Fitted Mixed-Effect Models
lmerResp Generator objects for the response classes
lmerResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
lmList List of lm Objects with a Common Model
lmList-class Class "lmList" of 'lm' Objects on Common Model
lmResp Generator objects for the response classes
lmResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
logLik.merMod Class "merMod" of Fitted Mixed-Effect Models
mcmcsamp Create an MCMC sample
merMod-class Class "merMod" of Fitted Mixed-Effect Models
merPredD Generator object for the 'merPredD' class
merPredD-class Class '"merPredD"' - a dense predictor reference class
mkdevfun Create a deviance evaluation function from a predictor and a response module
mkRespMod Create an lmerResp, glmResp or nlsResp instance
mkReTrms Create Z, Lambda, Lind, etc.
model.frame.merMod Class "merMod" of Fitted Mixed-Effect Models
model.matrix.merMod Class "merMod" of Fitted Mixed-Effect Models
NelderMead Generator object for the Nelder-Mead optimizer class.
NelderMead-class Class '"NelderMead"'
Nelder_Mead Nelder-Mead optimization
nlformula Manipulate a nonlinear model formula.
nlmer Fit Nonlinear Mixed-Effects Models
nlmerMod-class Class "merMod" of Fitted Mixed-Effect Models
nlsResp Generator objects for the response classes
nlsResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
nobars Omit terms separated by vertical bars in a formula
Pastes Paste strength by batch and cask
Penicillin Variation in penicillin testing
predict.merMod Predictions from a model at new data values
print.merMod Class "merMod" of Fitted Mixed-Effect Models
print.summary.mer Class "merMod" of Fitted Mixed-Effect Models
profile-methods Methods for profile() of [ng]lmer fitted models
profile.merMod Methods for profile() of [ng]lmer fitted models
ranef Extract the modes of the random effects
ranef.merMod Extract the modes of the random effects
refit Refit a model by maximum likelihood criterion
refitML Refit a model by maximum likelihood criterion
rePos Generator object for the rePos (random-effects positions) class
rePos-class Class '"rePos"'
show-method Class "lmList" of 'lm' Objects on Common Model
show-method Class "merMod" of Fitted Mixed-Effect Models
show.merMod Class "merMod" of Fitted Mixed-Effect Models
show.summary.mer Class "merMod" of Fitted Mixed-Effect Models
sigma Extract residual standard error
simulate.merMod Simulate responses from a 'merMod' object
sleepstudy Reaction times in a sleep deprivation study
subbars "Sub[stitute] Bars"
summary.merMod Class "merMod" of Fitted Mixed-Effect Models
summary.summary.mer Class "merMod" of Fitted Mixed-Effect Models
terms.merMod Class "merMod" of Fitted Mixed-Effect Models
update.merMod Class "merMod" of Fitted Mixed-Effect Models
VarCorr Extract variance and correlation components
VarCorr.merMod Extract variance and correlation components
varianceProf Transform to the variance scale
vcov.merMod Class "merMod" of Fitted Mixed-Effect Models
vcov.summary.mer Class "merMod" of Fitted Mixed-Effect Models
VerbAgg Verbal Aggression item responses